PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229927.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 247aa    MW: 25666.2 Da    PI: 7.6598
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229927.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.93.1e-5859154297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+kyrelege
  XP_008229927.1  59 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRELEGE 153
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_008229927.1 154 K 154
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5453164IPR009072Histone-fold
SuperFamilySSF471135.74E-4061161IPR009072Histone-fold
PfamPF008081.0E-2764128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-2292110No hitNo description
PROSITE patternPS00685095111IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.2E-22111129No hitNo description
PRINTSPR006158.2E-22130148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MHYYPSRSNG PQHRCLSSLI ALRRSPSDTP KNPDMADSDN DSGGNNDGSQ AQSGELSARE  60
QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN  120
GDDLLWAMTT LGFEEYVEPL KVYLQKYREL EGEKITMGGR DKDSAGGGGG GASGGGVSSG  180
SSGGGGGYNG VYGGMVMMGN HHHQGHVYGS GGGYQQHHMG MGSGGVRVGN SGGSGGGGGN  240
GGASVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4859149292Transcription factor HapC (Eurofung)
4g92_B2e-4859149292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876631e-94KC787663.1 Brassica napus transcription factor subunit NF-YB3B (NF-YB3B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229927.11e-180PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233108e-77NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLD7UAG52e-84D7UAG5_VITVI; Putative uncharacterized protein
STRINGVIT_19s0015g00440.t015e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-70nuclear factor Y, subunit B3